PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc12g010810.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

LBD

Protein Properties

Length: 211aa MW: 24350.5 Da PI: 9.4069

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc12g010810.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	111.9	4.5e-35	9	104	1	96
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 aCa+Ck++r+kC+++Cvlapyfpae+ ++f++vhk+FG+sn++k++k+l+e++r++a++sl++eA +r+rdPv G +g ++++ ++l+ k Solyc12g010810.1.1 9 ACASCKHQRKKCTDKCVLAPYFPAEKIREFKAVHKVFGVSNITKIVKNLKEDDRRRAIESLIWEAFCRQRDPVLGPYGEYKRVYEELKLYK 99 7**************************************************************************************9999 PP DUF260 92 aelal 96 ++ ++ Solyc12g010810.1.1 100 SQYQQ 104 88765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.225	8	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.5E-34	9	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MQKPNGLAAC ASCKHQRKKC TDKCVLAPYF PAEKIREFKA VHKVFGVSNI TKIVKNLKED 60 DRRRAIESLI WEAFCRQRDP VLGPYGEYKR VYEELKLYKS QYQQILQAGS NNNNTDSNVN 120 GMIYDATTQG LINGWNINTK RNDINYINHD NSTVESWSSY NNKIINPLHH VQNIEKLRTE 180 NSNGSIVIVP QQQVYNDFNQ QYFLTGRIYP *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-21	4	86	6	88	LOB family transfactor Ramosa2.1
5ly0_B	1e-21	4	86	6	88	LOB family transfactor Ramosa2.1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00128	DAP	Transfer from AT1G06280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc12g010810.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019067077.1	1e-154	LOB domain-containing protein 2
Swissprot	Q9LNB9	5e-43	LBD2_ARATH; LOB domain-containing protein 2
TrEMBL	A0A3Q7J4M9	1e-156	A0A3Q7J4M9_SOLLC; Uncharacterized protein
STRING	Solyc12g010810.1.1	1e-156	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10177	18	27
Representative plant	OGRP60	16	318

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	4e-45	LOB domain-containing protein 2

Link Out ? help Back to Top
Phytozome	Solyc12g010810.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]