PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc12g010890.1.1

Common Name

LOC101055599

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Trihelix

Protein Properties

Length: 324aa MW: 35825.6 Da PI: 9.5182

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc12g010890.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	49.6	1.1e-15	57	147	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ +++Liea ++ +l+rg+l++++W+ev++++ ++ r+ +qCk++++ l+k+yk +k++ ++ +s+ + ++p+f++l+ Solyc12g010890.1.1 57 CWSEAATHTLIEAWGSLYVELKRGNLRQKHWQEVANAVnklhgNTKKQFRTDIQCKNRIDTLKKKYKIEKARVSQSHSRYVPQWPFFNSLD 147 7***********************************999986777779*******************99999********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.6E-24	55	148	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MSDDDLVASP SSNNNSPSPS PSPPPSSVKN ELATLPPPPM IPPASTRPAA FPAREDCWSE 60 AATHTLIEAW GSLYVELKRG NLRQKHWQEV ANAVNKLHGN TKKQFRTDIQ CKNRIDTLKK 120 KYKIEKARVS QSHSRYVPQW PFFNSLDVLI GDNFKPSPLP VTVAPRRKTP PLLPPPTSAV 180 PVGPRSKRPA AVMEDVVSRR NFSAMAAAAA AAASEDSDEE EESETSSPAT FTASAPSRRK 240 ESGALAEGCS RLAEAIGRFA EIYERVEDAK QRQMVELEKQ RMQFAKDLEI QRMKLIMESQ 300 VQLEKLKRAK NSSQADGYLY KEC*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.12765	0.0	fruit\| leaf

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00413	DAP	Transfer from AT3G58630	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc12g010890.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC236047	0.0	Solanum lycopersicum chromosome 12 clone LE_HBa-210E10, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004251804.1	0.0	trihelix transcription factor ASIL2 isoform X2
TrEMBL	A0A3Q7J4B2	0.0	A0A3Q7J4B2_SOLLC; Uncharacterized protein
STRING	Solyc12g010890.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1318	23	70
Representative plant	OGRP487	16	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	3e-66	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Solyc12g010890.1.1
Entrez Gene	101055599

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]