PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc12g019810.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB_related

Protein Properties

Length: 75aa MW: 8854.04 Da PI: 5.6157

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc12g019810.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.8	3.8e-16	7	53	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 + rW + Edell+++++++G ++W+ I + ++ Rt+k+c+++w ++l Solyc12g019810.1.1 7 KRRWNPGEDELLKKLIEEHGAKNWSFICQLIP-SRTEKSCREFWCDHL 53 579***************************.*********9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	22.909	2	57	IPR017930	Myb domain
SuperFamily	SSF46689	1.36E-17	3	68	IPR009057	Homeodomain-like
SMART	SM00717	6.1E-14	6	55	IPR001005	SANT/Myb domain
Pfam	PF00249	2.8E-15	7	53	IPR001005	SANT/Myb domain
CDD	cd00167	1.44E-12	9	53	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.5E-23	9	71	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 75 aa Download sequence Send to blast
MKMGQIKRRW NPGEDELLKK LIEEHGAKNW SFICQLIPSR TEKSCREFWC DHLNPQLDHQ 60 PFNPEEEDII FQGS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc12g019810.1.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015060233.1	4e-33	transcription factor MYB44-like
TrEMBL	A0A3Q7J786	4e-48	A0A3Q7J786_SOLLC; Uncharacterized protein
STRING	Solyc12g019810.1.1	6e-49	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA18536	2	4
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	2e-21	myb domain protein 73

Link Out ? help Back to Top
Phytozome	Solyc12g019810.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]