PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc12g019820.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 76aa    MW: 8701.02 Da    PI: 8.785
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc12g019820.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.35.5e-113164237
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
     Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtl 37
                        + +T eE++++++a++++G+  W+ Ia+ ++ gRt 
  Solyc12g019820.1.1 31 QYFTLEEEDIILKAHAKFGNQ-WAMIASLLP-GRTN 64
                        579****************99.*********.**95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.773128IPR017930Myb domain
CDDcd001670.00439324No hitNo description
SuperFamilySSF466897.89E-21468IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.7E-12438IPR009057Homeodomain-like
PROSITE profilePS512947.7253071IPR017930Myb domain
PfamPF002498.2E-93163IPR001005SANT/Myb domain
CDDcd001675.94E-73363No hitNo description
Gene3DG3DSA:1.10.10.601.9E-123968IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    Send to blast
MGHINQLIPS RTAKSCKERW CNHLNPQLDH QYFTLEEEDI ILKAHAKFGN QWAMIASLLP  60
GRTNGFIKKS LEFHP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-184683094MYB PROTO-ONCOGENE PROTEIN
1mse_C5e-184683094C-Myb DNA-Binding Domain
1msf_C5e-184683094C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc12g019820.1.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015060233.17e-30transcription factor MYB44-like
SwissprotO231606e-21MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A3Q7J6M51e-46A0A3Q7J6M5_SOLLC; Uncharacterized protein
STRINGSolyc12g019820.1.19e-51(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA3024922
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.13e-24myb domain protein 70
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]