PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc12g019900.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB_related

Protein Properties

Length: 191aa MW: 21547.8 Da PI: 7.4466

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc12g019900.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.6	3.8e-10	9	42	3	37
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37 rW + Edell+++++++G ++W+ I++ ++ Rt Solyc12g019900.1.1 9 RWNPGEDELLKKLIEEHGAKNWSFISQLIP-SRTM 42 9*****************************.9995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.01E-8	3	41	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.1E-10	7	42	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.201	7	41	IPR017877	Myb-like domain
Pfam	PF00249	1.4E-8	9	42	IPR001005	SANT/Myb domain
CDD	cd00167	4.23E-10	9	44	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MKIGQIKHRW NPGEDELLKK LIEEHGAKNW SFISQLIPSR TMSEDLTFEK PQLPLQRSSS 60 VGTCINLGSP SKSHLSNLEF SRFPQLCLYP PTIPLCQNLP HSTYSPVIPY PFTSLTFYES 120 YLSNLCISRY PWLSLYPYIA QLSEIFPFSS GSLVLPSPST TLILSLSGFK PIKNLNPINR 180 IDQEDEVTLV *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc12g019900.1.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015060234.1	4e-52	transcription factor MYB41-like
TrEMBL	A0A3Q7JUC9	1e-134	A0A3Q7JUC9_SOLLC; Uncharacterized protein
STRING	Solyc12g019900.1.1	1e-134	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA30253	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	3e-08	myb domain protein 73

Link Out ? help Back to Top
Phytozome	Solyc12g019900.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]