PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc12g036430.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bHLH

Protein Properties

Length: 165aa MW: 18842.1 Da PI: 6.3642

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc12g036430.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.4	4.6e-07	102	130	5	32
HHHHHHHHHHHHHHHHHHHHCTSCC.C.. CS HLH 5 hnerErrRRdriNsafeeLrellPk.ask 32 h +Er RR+++ + fe+L +l+P+ + k Solyc12g036430.1.1 102 HIWMERERRKKMQTLFETLHSLVPNlPAK 130 5568*********************5423 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.6E-7	95	132	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.09E-5	95	132	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.4E-6	101	130	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-4	102	130	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MIRGDENNHD FPWETNDFWS YLNLNDNHVG SGETFDGDKL PDLTRSDTCQ PLIVVKEVVQ 60 TTIGVGKKRS PPNRKRNGKE IAESNSDADR AETKRKSEHE IHIWMERERR KKMQTLFETL 120 HSLVPNLPAK AKGGSDTTQF SEEFTVEERF MQAAIQIMPL TTPK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	93	111	KRKSEHEIHIWMERERRKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc12g036430.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015163699.1	4e-68	PREDICTED: transcription factor bHLH95-like
TrEMBL	A0A3Q7J7Y3	9e-93	A0A3Q7J7Y3_SOLLC; Uncharacterized protein
STRING	Solyc12g036430.1.1	1e-120	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1324	23	69
Representative plant	OGRP1226	15	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49770.1	2e-13	bHLH family protein

Link Out ? help Back to Top
Phytozome	Solyc12g036430.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]