PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc12g038440.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

ERF

Protein Properties

Length: 82aa MW: 9474.53 Da PI: 5.6844

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc12g038440.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	30.9	7e-10	10	57	3	54
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 yk Vr ++ + + +eI p k+ +++lg+f taeeAa+ ++a+k ++ Solyc12g038440.1.1 10 YKSVRNRP-WETYGVEITNPI---KKVHVWLGNFKTAEEAARDFDEAAKMYH 57 89999666.999999988852...35***********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	15.923	9	66	IPR001471	AP2/ERF domain
SMART	SM00380	1.3E-13	9	72	IPR001471	AP2/ERF domain
CDD	cd00018	3.23E-19	10	68	No hit	No description
Pfam	PF00847	4.1E-5	10	57	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	7.1E-20	10	66	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.5E-5	10	21	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.05E-13	10	67	IPR016177	DNA-binding domain
PRINTS	PR00367	1.5E-5	32	48	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 82 aa Download sequence Send to blast
MAFPPNDVLY KSVRNRPWET YGVEITNPIK KVHVWLGNFK TAEEAARDFD EAAKMYHDPN 60 AKLNFPPTNE DRFQNSNNFE T*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, in cultured cells and at low levels in buds and leaves. Highly expressed in cell culture, especially during the exponential phase. {ECO:0000269\|PubMed:11440157, ECO:0000269\|PubMed:7756828}.

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. May regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269\|PubMed:10652129, ECO:0000269\|PubMed:10792818, ECO:0000269\|PubMed:12654868, ECO:0000269\|PubMed:7756828, ECO:0000269\|Ref.2}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc12g038440.1.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and to lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemical transient expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Not influenced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269\|PubMed:10652129, ECO:0000269\|PubMed:12090623, ECO:0000269\|PubMed:7756828, ECO:0000269\|Ref.2}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015163301.1	3e-37	PREDICTED: ethylene-responsive transcription factor 4-like
Swissprot	Q40477	1e-16	ERF4_TOBAC; Ethylene-responsive transcription factor 4
TrEMBL	A0A3Q7J7P4	2e-53	A0A3Q7J7P4_SOLLC; Uncharacterized protein
STRING	Solyc12g038440.1.1	3e-54	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA17252	3	5
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72360.1	3e-12	ERF family protein

Link Out ? help Back to Top
Phytozome	Solyc12g038440.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Ogata T, et al. Involvement of NtERF3 in the cell death signalling pathway mediated by SIPK/WIPK and WRKY1 in tobacco plants. Plant Biol (Stuttg), 2015. 17(5): p. 962-72 [PMID:25996234]