PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc12g038510.1.1
Common NameLOC101263981
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MIKC_MADS
Protein Properties Length: 251aa    MW: 28442.4 Da    PI: 9.2568
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc12g038510.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.31.5e-31959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krienk+nrqvtf+kRrng+lKKA+ELS+LCdaeva+iifss+gklye+ss
  Solyc12g038510.1.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSILCDAEVALIIFSSRGKLYEFSS 59
                        79***********************************************96 PP
2K-box99.45.1e-338417311100
               K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                          ++++  ++e+ +Lk+++e Lqr+qRh+lGedL++L+ keL+qLe+qL+ slkk+RskK++ +l+q+ +lq+ke++l+e+nk+L++klee
  Solyc12g038510.1.1  84 VSDTQMNYNEYVRLKARVELLQRSQRHILGEDLGTLNSKELEQLEHQLDASLKKVRSKKTQSMLDQLADLQEKEQMLEEANKQLKNKLEE 173
                         5678999********************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.529161IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-40160IPR002100Transcription factor, MADS-box
CDDcd002652.31E-45279No hitNo description
SuperFamilySSF554555.36E-33278IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.9E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-333859IPR002100Transcription factor, MADS-box
PfamPF014861.6E-2786171IPR002487Transcription factor, K-box
PROSITE profilePS5129715.83587177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSILCD AEVALIIFSS RGKLYEFSSA  60
SSMMTTLEKY QQCSYASLDP MLPVSDTQMN YNEYVRLKAR VELLQRSQRH ILGEDLGTLN  120
SKELEQLEHQ LDASLKKVRS KKTQSMLDQL ADLQEKEQML EEANKQLKNK LEESAARIPL  180
GLSWGNNGGQ TMEYNRLPPQ TTAQPFFQPL RLNSSSPQFG YNPNMGANDH EVNAATTAHN  240
INGFIPGWML *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A2e-249317123101Developmental protein SEPALLATA 3
4ox0_B2e-249317123101Developmental protein SEPALLATA 3
4ox0_C2e-249317123101Developmental protein SEPALLATA 3
4ox0_D2e-249317123101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts redundantly with EJ2 to control meristem maturation and inflorescence architecture. {ECO:0000269|PubMed:28528644}.
Function -- GeneRIF ? help Back to Top
  1. SlMBP21 was a novel factor involved in organ size control. SlMBP21 negatively regulated cell expansion to control sepal size. [SlMBP21]
    [PMID: 29069449]
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc12g038510.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001275579.10.0MADS-box protein J2
SwissprotK4DEK00.0J2_SOLLC; MADS-box protein J2
TrEMBLQ9ATF11e-144Q9ATF1_PETHY; MADS-box transcription factor FBP9
STRINGSolyc12g038510.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.12e-87MIKC_MADS family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  3. Soyk S, et al.
    Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene.
    Cell, 2017. 169(6): p. 1142-1155.e12
    [PMID:28528644]
  4. Li N, et al.
    The MADS-Box Gene SlMBP21 Regulates Sepal Size Mediated by Ethylene and Auxin in Tomato.
    Plant Cell Physiol., 2017. 58(12): p. 2241-2256
    [PMID:29069449]