PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc12g042010.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bHLH

Protein Properties

Length: 128aa MW: 14792.3 Da PI: 11.8662

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc12g042010.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.7	0.00012	72	111	10	54
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++RR+r + f eLr+++P + ++ L ++ +YI+sL Solyc12g042010.1.1 72 KKRRRRSSDEFGELRKIVPGG-----QLMDFYNLLDETADYINSL 111 9******************74.....3466666666666666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.442	62	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.23E-8	63	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-6	72	121	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 128 aa Download sequence Send to blast
MTTTRSCIIR SRFAYRFLHS LRKMNQQDKT NSRRVKHAAY ASMASVVGSK RAWSRAVLSK 60 IRNRSLLLKK KKKRRRRSSD EFGELRKIVP GGQLMDFYNL LDETADYINS LTSQVHVMKN 120 ILNLLST*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	68	76	KKKKKRRRR
2	69	74	KKKKRR
3	70	75	KKKRRR
4	70	76	KKKRRRR
5	71	76	KKRRRR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.21468	0.0	leaf\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc12g042010.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC245824	1e-171	Solanum lycopersicum strain Heinz 1706 chromosome 1 clone sle-5e2 map 1, complete sequence
GenBank	AC246129	1e-171	Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-21f8 map 1, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015086956.2	5e-54	transcription factor IBH1-like
TrEMBL	A0A3Q7JVU1	1e-87	A0A3Q7JVU1_SOLLC; Uncharacterized protein
STRING	Solyc12g042010.1.1	2e-88	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11759	4	4

Link Out ? help Back to Top
Phytozome	Solyc12g042010.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]