PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc12g056750.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 189aa    MW: 22455 Da    PI: 8.9232
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc12g056750.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY826.2e-26105164159
                         ---SS-EEEEEEE--TT-.SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgs.efprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYG+K+vk++ ++ r+YY+C+ +gC+ kk+ver+ +d +++++tYeg+Hnhe
  Solyc12g056750.1.1 105 LDDGYKWRKYGKKKVKSNqKYLRNYYKCSIRGCMIKKRVERDGHDSSYLITTYEGKHNHE 164
                         59**************873689*************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-2792165IPR003657WRKY domain
SuperFamilySSF1182902.88E-2398165IPR003657WRKY domain
PROSITE profilePS5081124.696100166IPR003657WRKY domain
SMARTSM007742.9E-28105165IPR003657WRKY domain
PfamPF031061.3E-20106164IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MMTQDFSYNN NFQDFEFSSF LDQLFVDYSP TNNNNFNTCI LENDNSHLMT QDYSYNGISS  60
NSYYATPPNM NHLKEKSKEG IIKKEIKNNE RHVIVLRTKT QLEILDDGYK WRKYGKKKVK  120
SNQKYLRNYY KCSIRGCMIK KRVERDGHDS SYLITTYEGK HNHESYSSII YNHTEVNSEF  180
ELNFHRGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-2494164372WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc12g056750.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004252561.21e-137probable WRKY transcription factor 51
TrEMBLA0A3Q7JC601e-136A0A3Q7JC60_SOLLC; Uncharacterized protein
STRINGSolyc12g056750.1.11e-137(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA141921013
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.13e-22WRKY DNA-binding protein 51
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]