PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc12g087830.1.1
Common NameLOC101247413
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MIKC_MADS
Protein Properties Length: 199aa    MW: 22643.3 Da    PI: 8.9663
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc12g087830.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF823.9e-26959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        kri++k  rqv f+kRr+g+lKKA+E+S+LCd++vav+i+s++g+l+e+ss
  Solyc12g087830.1.1  9 KRIQDKNCRQVAFCKRRKGLLKKAKEISILCDVDVAVVIISNRGRLHEFSS 59
                        79***********************************************96 PP
2K-box40.71e-14811671399
               K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                         +ae    e++      e Lq++ R+l   + + L+l +L +Le++L+++l + R++K++l+le+ + l +kek l ee+k L+ +++
  Solyc12g087830.1.1  81 NAEIQVAEVSGFTTMGELLQTTERQLEETNADGLTLTDLIHLENELQTALIHLRARKTHLMLESAKVLHEKEKLLLEEKKHLEDNIA 167
                         555556677777888899****************************************************************98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.8E-32160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.525161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.71E-28279IPR002100Transcription factor, MADS-box
CDDcd002659.28E-33276No hitNo description
PRINTSPR004041.3E-23323IPR002100Transcription factor, MADS-box
PfamPF003198.7E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-232338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-233859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.00182172IPR002487Transcription factor, K-box
PfamPF014861.6E-1186166IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009910Biological Processnegative regulation of flower development
GO:0010048Biological Processvernalization response
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MGRRKVEIKR IQDKNCRQVA FCKRRKGLLK KAKEISILCD VDVAVVIISN RGRLHEFSSN  60
NSMTAMLRRY ESHVGAEKEI NAEIQVAEVS GFTTMGELLQ TTERQLEETN ADGLTLTDLI  120
HLENELQTAL IHLRARKTHL MLESAKVLHE KEKLLLEEKK HLEDNIASIK KNTKVNEMSD  180
LPAPHMICGQ QKVTLNFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-16184184MEF2C
5f28_B4e-16184184MEF2C
5f28_C4e-16184184MEF2C
5f28_D4e-16184184MEF2C
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.195500.0flower| fruit| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc12g087830.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001352612.11e-143MADS-box transcription factor
TrEMBLA0A3Q7JXP01e-142A0A3Q7JXP0_SOLLC; Uncharacterized protein
STRINGSolyc12g087830.1.11e-143(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65070.13e-32MIKC_MADS family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]