PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc12g098460.1.1

Common Name

LOC101263298

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Protein Properties

Length: 210aa MW: 23499.3 Da PI: 5.8749

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc12g098460.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	77	2.1e-24	38	122	1	86
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f kvltpsdv+++ +v+p+++a ++ + + ++ ++d+s +sW++kl y+++s+++++t+GW +Fv+a++Lk+gD+++F l + Solyc12g098460.1.1 38 FHKVLTPSDVGNKT-FVIPRRYALKYfsH--IQHNEEVDFYDSSTQSWRFKLFYCQSSKKFTFTRGWHKFVQAKNLKAGDTIIFNLCE 122 89*******997.*******643..445669*********************************************9754 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	7.0E-25	29	120	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.23E-22	37	123	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.08E-20	37	120	No hit	No description
PROSITE profile	PS50863	13.987	37	142	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.5E-22	38	122	IPR003340	B3 DNA binding domain
SMART	SM01019	7.4E-15	38	142	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MEGQSNNVSD SRLMKGVLDE QNSQPTMGNS ESSLQQLFHK VLTPSDVGNK TFVIPRRYAL 60 KYFSHIQHNE EVDFYDSSTQ SWRFKLFYCQ SSKKFTFTRG WHKFVQAKNL KAGDTIIFNL 120 CEIKNGTHEN SNTFVIDVVK NDEGLSMDLA LNHNDVAVDV DAAPNDEGLP MDLALNHNDV 180 AVDVDAAPTP VLLFGKQIGW TKSKRGNEV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	1e-15	35	135	5	108	B3 domain-containing transcription factor NGA1
5os9_B	1e-15	35	135	5	108	B3 domain-containing transcription factor NGA1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc12g098460.1.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019067024.2	1e-156	AP2/ERF and B3 domain-containing transcription factor At1g50680-like
TrEMBL	A0A3Q7JYQ8	1e-155	A0A3Q7JYQ8_SOLLC; Uncharacterized protein
STRING	Solyc12g098460.1.1	1e-156	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA16375	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51120.1	9e-24	RAV family protein

Link Out ? help Back to Top
Phytozome	Solyc12g098460.1.1
Entrez Gene	101263298

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]