PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc12g099370.1.1
Common NameLOC101265416
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GATA
Protein Properties Length: 169aa    MW: 18486.8 Da    PI: 10.2961
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc12g099370.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.42.3e-193367135
                GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                        C+ CgttkTplWR gp g+k+LCnaCG++ rkk++
  Solyc12g099370.1.1 33 CVDCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRR 67
                        ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.732763IPR000679Zinc finger, GATA-type
SMARTSM004011.1E-142777IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.66E-132967No hitNo description
Gene3DG3DSA:3.30.50.109.3E-163167IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.60E-133267No hitNo description
PfamPF003204.5E-173367IPR000679Zinc finger, GATA-type
PROSITE patternPS0034403358IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MVDTSDKVQE TGEMIGQNQT PERVTSETNQ KTCVDCGTTK TPLWRGGPAG PKSLCNACGI  60
RSRKKRRALL GLNKDDKKSK KSSSKSVVNH HQQNQSSNSS SSTSSSGESM SNVIVKNECI  120
PYKKRLLHFD REVGLQRPRS NSTHRRKLGE EEQAAFLLMA LSCGSVYA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00554DAPTransfer from AT5G49300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc12g099370.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004252918.11e-122GATA transcription factor 16-like
TrEMBLA0A3Q7JFI81e-121A0A3Q7JFI8_SOLLC; Uncharacterized protein
STRINGSolyc12g099370.1.11e-122(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19992362
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.14e-30GATA transcription factor 15
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]