PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc12g100150.1.1

Common Name

LOC101250976

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

LBD

Protein Properties

Length: 169aa MW: 18630 Da PI: 7.5377

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc12g100150.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	137	6.8e-43	14	113	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrr+C++dCv++pyfp+++p+kfa vhk+FGasnv k++++l+e +r da+ss+vyeA+ar++dP+yG+vg+i++l++q+e l+ Solyc12g100150.1.1 14 PCAACKLLRRRCTQDCVFSPYFPSDEPHKFASVHKVFGASNVNKMIQELQEYQRGDAVSSMVYEANARIKDPIYGCVGTISSLHHQIEFLH 104 7**************************************************************************************** PP DUF260 92 aelallkee 100 ++la +++e Solyc12g100150.1.1 105 TQLAIAQAE 113 **99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.398	13	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.8E-42	14	111	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MKESGGRKQG ATSPCAACKL LRRRCTQDCV FSPYFPSDEP HKFASVHKVF GASNVNKMIQ 60 ELQEYQRGDA VSSMVYEANA RIKDPIYGCV GTISSLHHQI EFLHTQLAIA QAELVHMKMQ 120 QFSSMSGGGG TAANSPKNVW SPSSQHLQSE VYSEFEIYDS VQQPQINI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-45	10	125	7	122	LOB family transfactor Ramosa2.1
5ly0_B	1e-45	10	125	7	122	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.23437	0.0	stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc12g100150.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC212792	0.0	Solanum lycopersicum DNA sequence from clone LE_HBa-224N6 on chromosome 12, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004252871.1	1e-125	LOB domain-containing protein 4
Swissprot	Q9SHE9	6e-61	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A3Q7JE49	1e-123	A0A3Q7JE49_SOLLC; Uncharacterized protein
STRING	Solyc12g100150.1.1	1e-124	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669
Representative plant	OGRP60	16	318

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	5e-62	LOB domain-containing protein 4

Link Out ? help Back to Top
Phytozome	Solyc12g100150.1.1
Entrez Gene	101250976

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]