PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen00g008050.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 234aa    MW: 26566 Da    PI: 7.9367
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen00g008050.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.93.8e-08115162455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR +iN+++  L++++P +     k +  a +L + ++Y++sLq
  Sopen00g008050.1 115 SHSLAERVRRGKINERLRCLQDIVPGC----YKTMGMAGMLDEIINYVQSLQ 162
                       8*************************8....35599999*********9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.19E-8109166No hitNo description
SuperFamilySSF474594.19E-16109179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.2E-16111173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.027111161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-5115162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-8117167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MMTIPCSSDM SSFNIQSSME FSNDNVFTQV TDQFPGSLQE IFQGNIQQES KNEEINDSKK  60
RKISDTPESS SASATGHKRR NTKGRGNRVK IDEKEEEKPR EVVHVRAKRG QATDSHSLAE  120
RVRRGKINER LRCLQDIVPG CYKTMGMAGM LDEIINYVQS LQNQVEFLSM KLTAASSYYD  180
FNSESDILVS LQRAKAYEAL KMQKMMKKEI ECEVMSSNQV GPNFGSYPML PYNT
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754421e-133HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015067634.11e-175transcription factor BEE 3
SwissprotQ8GWK71e-61BEE3_ARATH; Transcription factor BEE 3
TrEMBLA0A3Q7FUH21e-169A0A3Q7FUH2_SOLLC; Uncharacterized protein
STRINGSolyc03g119390.2.11e-169(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39712344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73830.14e-64BR enhanced expression 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]