PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen00g008560.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 173aa    MW: 19103.2 Da    PI: 4.3826
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen00g008560.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-073577145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                      ++ ++++E+ l+++ + +   + W++Ia +++ gR + ++  +w 
  Sopen00g008560.1 35 KLEFSEDEEMLIAKMFSLVRER-WSLIAGRIP-GRNADEIEKYWK 77
                      678*****************99.*********.***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.3623084IPR017930Myb domain
SMARTSM007171.9E-53482IPR001005SANT/Myb domain
PfamPF002491.9E-63677IPR001005SANT/Myb domain
SuperFamilySSF466891.71E-63781IPR009057Homeodomain-like
CDDcd001678.71E-63777No hitNo description
Gene3DG3DSA:1.10.10.604.4E-103778IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MADWDRSSTS DNASVVSPDS TRVVALETTN EETSKLEFSE DEEMLIAKMF SLVRERWSLI  60
AGRIPGRNAD EIEKYWKSKY SKSQEEIQAQ SQDEAQSIGL IEKTGPSTGH PQQFLFPEKK  120
PISVCQPSDT GPQLLGLITA GPQQLLGPKT DGPNSITTDQ KLVNPAQDQI NQP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754461e-150HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015081750.11e-125trichome differentiation protein GL1-like
TrEMBLA0A2H5AJN71e-111A0A2H5AJN7_SOLLC; MYB-like transcriptional factor MYBATV-X1 transcript variant 1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA65791932
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01380.15e-14MYB_related family protein