PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen00g013830.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 141aa    MW: 16462.4 Da    PI: 6.7976
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen00g013830.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM286.2e-094311451128
               NAM  51 vkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       + +++++ y F+  +kk++ gk  +ra++ g+Wk+ g+ +++ +++g+++g+ k   + +       +  W+m+ey+l
  Sopen00g013830.1  43 LGTNNTDHYVFTLLQKKKEDGKYFSRAIAGGVWKEYGTAESLEDSEGSQIGIMKKYRLVE------DNYVWTMKEYSL 114
                       34566789*******************************************999988872......3468******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100511.8361141IPR003441NAC domain
PfamPF023652.0E-518114IPR003441NAC domain
SuperFamilySSF1019413.4E-1144140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MAANFTNKQL MEFLIKSFTF VPYEDQGFGL VDLYGKEKVS QILGTNNTDH YVFTLLQKKK  60
EDGKYFSRAI AGGVWKEYGT AESLEDSEGS QIGIMKKYRL VEDNYVWTMK EYSLTESKRN  120
ELKQKYEYTA HGEFVMCHIR X
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3Q7FJC63e-94A0A3Q7FJC6_SOLLC; Uncharacterized protein
STRINGSolyc02g062210.1.15e-95(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2075933