PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g001230.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 283aa    MW: 31644.8 Da    PI: 8.599
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g001230.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.0002591113123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C+ C++ Fs++  L  H++ H
  Sopen01g001230.1  91 FSCSFCKREFSTSQALGGHQNAH 113
                       89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.1E-482117IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.22E-688118No hitNo description
PROSITE profilePS5015711.55291118IPR007087Zinc finger, C2H2
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MSATSEESHE IVTKTKKMKE KVVEGSQLKQ HESSSGGVLL DLKVHNNNNN NMNTNCSNLE  60
LKLFNSTPAR ASESSNEATP KQRCSSDART FSCSFCKREF STSQALGGHQ NAHKQERALA  120
KRRNGLVDVV SSFGPPNYHP YYNPYSSFNS HIPFHTSFPT RSSLGLQGDS SMIHKPTSYP  180
TWPYFSAYNF RLNPEKWSSS SSSSSFFRTE NVLGNNILGT SLENSHFEKK NNTKGFSLMN  240
SPINLDDSLN GNNNTKLGLG KEEAKKNNEE EEEESKLDLN LRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015072327.10.0zinc finger protein 3-like
TrEMBLM1C3041e-173M1C304_SOLTU; Uncharacterized protein
STRINGSolyc01g005200.1.11e-176(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39672138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.14e-17zinc-finger protein 1