PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g001650.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 252aa    MW: 28987 Da    PI: 6.6791
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g001650.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.2e-172776255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      ++ GVr+++ +g+WvAeI+  +   ++ r +lg+f++aeeAa+a+++a+  l+g
  Sopen01g001650.1 27 KFVGVRQRP-SGKWVAEIKNTT---QKIRMWLGTFDSAEEAARAYDEAACLLRG 76
                      799******.7******99932...36**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.5E-372790IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-192784IPR016177DNA-binding domain
CDDcd000187.99E-332783No hitNo description
PROSITE profilePS5103219.6642784IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-282785IPR001471AP2/ERF domain
PfamPF008474.8E-132776IPR001471AP2/ERF domain
PRINTSPR003671.2E-72839IPR001471AP2/ERF domain
PRINTSPR003671.2E-75066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MEQQQQQQLQ LHNPIKKFSP KLQKQRKFVG VRQRPSGKWV AEIKNTTQKI RMWLGTFDSA  60
EEAARAYDEA ACLLRGSNAR TNFHNHTPVS PALSMKIRNL INHKKSLNKI NHKSTSTSST  120
STRASSSSIP TSATSHQESQ ISNDDAYKPD LNFYDQITSS NFDHTSTFTN DFDTILLDDE  180
NVDNFHDVVP KEIIEDHTQF ENMRVERQIS ASLYAMNGVN EYWDNFHDSS NNNNNDATYW  240
DLPMLYQMFC PS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1427831471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027769900.10.0ethylene-responsive transcription factor ERN1
TrEMBLA0A3Q7E7F11e-139A0A3Q7E7F1_SOLLC; Uncharacterized protein
STRINGSolyc01g005630.1.11e-136(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20182261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-30related to AP2 11