PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen01g003050.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

TALE

Protein Properties

Length: 703aa MW: 77116.9 Da PI: 6.8865

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen01g003050.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29	1.9e-09	404	441	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Sopen01g003050.1 404 FEHflHPYPKDSDKMMLAKQTGLTRSQVSNWFINARVR 441 554459******************************88 PP
2	BELL	113.4	1.2e-36	268	339	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kkakL+++l+eV++rY++y++q+q vi+ e++ag+gsak Yt+lAl++iS++FrcLkdai++qi Sopen01g003050.1 268 ERQEIQMKKAKLVNMLDEVEQRYRHYHHQMQSVINWLEQAAGIGSAKTYTALALQTISKQFRCLKDAIIGQI 339 79*********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.5E-54	192	337	IPR006563	POX domain
Pfam	PF07526	4.7E-46	199	335	IPR006563	POX domain
PROSITE profile	PS50071	12.147	382	445	IPR001356	Homeobox domain
CDD	cd00086	6.05E-13	385	446	No hit	No description
SMART	SM00389	9.7E-10	385	449	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.99E-17	386	451	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.2E-28	388	451	IPR009057	Homeodomain-like
Pfam	PF05920	3.8E-18	402	441	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009610	Biological Process	response to symbiotic fungus
GO:0009737	Biological Process	response to abscisic acid
GO:0010197	Biological Process	polar nucleus fusion
GO:0010201	Biological Process	response to continuous far red light stimulus by the high-irradiance response system
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 703 aa Download sequence Send to blast
MASYFHGNSE IQEGNDGLQT LILMNPGYVG FSEAQHHHAP PPPPQGGGGS SNIVFFNSNP 60 LGNSINLSHA PPPPPSQQQQ FVGIPLATAA FTAPSQDSGN NNNHHNHNNE SALHGFLARS 120 SPYGFYNPAN DITAAREVTR AHHQQQQGLS LSLSSSQQPS FGSFTAAREI ASSPTGSASA 180 SGIQQQQQQQ QQSICSVPLS SKYMKAAQEL LDEVVNVGKS MKSSNSTEVV VYNDVKKSKN 240 MVDMDGRLDG VGPAEKDGAP TNELSTAERQ EIQMKKAKLV NMLDEVEQRY RHYHHQMQSV 300 INWLEQAAGI GSAKTYTALA LQTISKQFRC LKDAIIGQIR SASKTLGEED SLGGKIEGSR 360 LKFVDNQLRQ QRALQQLGMI QHNAWRPQRG LPERAVSVLR AWLFEHFLHP YPKDSDKMML 420 AKQTGLTRSQ VSNWFINARV RLWKPMVEEM YLEEIKEHEQ NALGQEKTSK VGEQNEDSTT 480 SRSIATQDKS PGSDSQKQDN PASSIPMSNA TSIPPIGMNI RNQSAGFNLI GSPDIESINV 540 TQGSPKKPRS NEMLQHSPNS IPSINMDVKP NEEQMSMKFG DDRQDRDGFS LMGGPMNFMG 600 GFGAYPIGEI ARFSTEQFSA PYSTSGTVSL TLGLPHNENL SMSATHHSFL PIPTQNVQIG 660 EPNHEFGSLN TPTSAHSTSN VYENFNIQNR KRFAAPLLPD FVA

Sequence ? help Back to Top

Protein Sequence Length: 703 aa Download sequence Send to blast

MASYFHGNSE IQEGNDGLQT LILMNPGYVG FSEAQHHHAP PPPPQGGGGS SNIVFFNSNP  60
LGNSINLSHA PPPPPSQQQQ FVGIPLATAA FTAPSQDSGN NNNHHNHNNE SALHGFLARS  120
SPYGFYNPAN DITAAREVTR AHHQQQQGLS LSLSSSQQPS FGSFTAAREI ASSPTGSASA  180
SGIQQQQQQQ QQSICSVPLS SKYMKAAQEL LDEVVNVGKS MKSSNSTEVV VYNDVKKSKN  240
MVDMDGRLDG VGPAEKDGAP TNELSTAERQ EIQMKKAKLV NMLDEVEQRY RHYHHQMQSV  300
INWLEQAAGI GSAKTYTALA LQTISKQFRC LKDAIIGQIR SASKTLGEED SLGGKIEGSR  360
LKFVDNQLRQ QRALQQLGMI QHNAWRPQRG LPERAVSVLR AWLFEHFLHP YPKDSDKMML  420
AKQTGLTRSQ VSNWFINARV RLWKPMVEEM YLEEIKEHEQ NALGQEKTSK VGEQNEDSTT  480
SRSIATQDKS PGSDSQKQDN PASSIPMSNA TSIPPIGMNI RNQSAGFNLI GSPDIESINV  540
TQGSPKKPRS NEMLQHSPNS IPSINMDVKP NEEQMSMKFG DDRQDRDGFS LMGGPMNFMG  600
GFGAYPIGEI ARFSTEQFSA PYSTSGTVSL TLGLPHNENL SMSATHHSFL PIPTQNVQIG  660
EPNHEFGSLN TPTSAHSTSN VYENFNIQNR KRFAAPLLPD FVA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	4e-16	391	449	5	63	Homeobox protein Meis2
3k2a_B	4e-16	391	449	5	63	Homeobox protein Meis2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	0.0	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015062369.1	0.0	BEL1-like homeodomain protein 1
Swissprot	Q9SJ56	1e-153	BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBL	A0A3Q7ERP5	0.0	A0A3Q7ERP5_SOLLC; Uncharacterized protein
STRING	Solyc01g007070.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1478	24	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	1e-123	BEL1-like homeodomain 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]