PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen01g003750.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

TCP

Protein Properties

Length: 249aa MW: 26090.2 Da PI: 9.2448

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen01g003750.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	121.7	8.5e-38	31	116	2	88
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg 88 ++kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s ++s s s + Sopen01g003750.1 31 TVKKPPAKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTIPASFStVSVSLRNSIS--SVT 116 689******************************************************************87743333333333..222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.6E-34	37	126	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.675	37	91	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MSTSVEQNGA VLLDSTAGSG GGVANSNGAL TVKKPPAKDR HSKVDGRGRR IRMPIVCAAR 60 VFQLTRELGH KSDGQTIEWL LRQAEPSIIA ATGTGTIPAS FSTVSVSLRN SISSVTASAP 120 VDHKFPSPSP SLLHPLISPA PFLLGKRLRS EDDDNGSGDK DVVPSAGFWA VPARPDFGQV 180 WSFAAPSPEI SHSAAAAMNT QPSRFLQQQM EEASAGRVGN YFPIAQGHLN LLASLSGSGS 240 GPRRDDDGQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	0.0	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015062295.1	0.0	transcription factor TCP7
Swissprot	Q9FMX2	2e-80	TCP7_ARATH; Transcription factor TCP7
TrEMBL	G3BGV5	1e-178	G3BGV5_SOLLC; TCP transcription factor 15
STRING	Solyc01g008230.2.1	1e-179	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3951	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	2e-72	TCP family protein