PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g005850.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family YABBY
Protein Properties Length: 507aa    MW: 58238.7 Da    PI: 9.2235
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g005850.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY33.21.7e-103704001646
             YABBY  16 nfCntilavsvPstslfkvvtvrCGhCtsll 46 
                        fCntilav +P + l+ +vtv+CGhC +l 
  Sopen01g005850.1 370 IFCNTILAVGIPCKKLLDTVTVKCGHCGNLS 400
                       4***************************984 PP
2YABBY89.77.6e-28433495101163
             YABBY 101 lsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163
                        s++++ ++p++p v++PPek+ r Psaynrf+k+eiqrika+ P+i hreafsaaaknWa +
  Sopen01g005850.1 433 SSSSSEPSSPKAPFVVKPPEKKHRLPSAYNRFMKDEIQRIKAAHPEIPHREAFSAAAKNWARY 495
                       36677788999999***********************************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037322.0E-5114205IPR005162Retrotransposon gag domain
PfamPF046902.8E-42371495IPR006780YABBY protein
SuperFamilySSF470955.5E-8439493IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.3E-4449494IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MLQRRNLQQE VVVEVGIEEA RGRGRGRVAP VGNEVLFENI PMNENPLALN EEIEYDIEVK  60
DVEEVEQEEE VPAKAMLKPP VFLGSASEDA YEFILDCYER FHILGTVYQY GVEFVSFQFE  120
CEAKKWWRAY MKCKSSALPP LTWTQFHTLF LEKYVPRTLR DRKKDEFMTL KKCGRSFNEV  180
TYYVKKVDGV RRDNQAKTLT KRAKNSGNLQ GSYYKGSGRP TLAAKPIHSC MTASAEHGHM  240
RRDFPYPHVL DSAKQSSKVV VSTGNCNNGR ERPQVGRRGS LAYRLALPPN LSNVHSIFHV  300
TMLKRYHCDC DYIIKWDSIV LENDLQYEEE PIMKLDHDVR KLRTKKIKSL KVQWKHSPVE  360
EATCETKKDI FCNTILAVGI PCKKLLDTVT VKCGHCGNLS FLSSRPPIQP QFFDHQPILQ  420
HQDFFNNFKK GQSSSSSEPS SPKAPFVVKP PEKKHRLPSA YNRFMKDEIQ RIKAAHPEIP  480
HREAFSAAAK NWARYIPNTP NGTLAEK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-163HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52102339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.17e-52YABBY family protein