PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g006250.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HD-ZIP
Protein Properties Length: 283aa    MW: 32897.2 Da    PI: 7.094
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g006250.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.69.3e-18116167556
                       SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       ++++ eq+++Le  Fe  +++  e++ +LA+ lgL+ rqV +WFqNrRa++k
  Sopen01g006250.1 116 RRLNMEQVKTLEMNFELGNKLEVERKIQLARALGLQPRQVAIWFQNRRARWK 167
                       57899**********************************************9 PP
2HD-ZIP_I/II120.49.4e-39114204292
       HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                       k rrl+ eqvk+LE++Fe  +kLe erK +lar+Lglqprqva+WFqnrRAR+ktkqlEkdy++Lkr++d +k++ne+L +++++L+ e++
  Sopen01g006250.1 114 KIRRLNMEQVKTLEMNFELGNKLEVERKIQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDVLKREFDVIKSQNEALLAHNHKLQVEIM 204
                       669************************************************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.066109169IPR001356Homeobox domain
SuperFamilySSF466891.03E-18110171IPR009057Homeodomain-like
SMARTSM003895.2E-17112173IPR001356Homeobox domain
CDDcd000862.50E-14113170No hitNo description
PfamPF000464.1E-15116167IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-18117176IPR009057Homeodomain-like
PRINTSPR000311.3E-5140149IPR000047Helix-turn-helix motif
PROSITE patternPS000270144167IPR017970Homeobox, conserved site
PRINTSPR000311.3E-5149165IPR000047Helix-turn-helix motif
PfamPF021831.5E-14169208IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MWLVASGGSD GFGGMFPGGP WQWCGYWVLI RYSRKKFTKP MTSCNNEMDF FPTNLMQHTP  60
HEDNHQDHFH GVTSFLGKRS MSFSNKCDDQ NHGDQEDVLS DDGTHHEAIL REKKIRRLNM  120
EQVKTLEMNF ELGNKLEVER KIQLARALGL QPRQVAIWFQ NRRARWKTKQ LEKDYDVLKR  180
EFDVIKSQNE ALLAHNHKLQ VEIMTLKNGK GPTESINLNK ETDQGSICST RSENSTEIMK  240
LQCNNMKLMD QTVKEETLSN IFCGIDDNSS GFWPWLDQQP HFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161169RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015086779.10.0homeobox-leucine zipper protein ATHB-13-like isoform X1
SwissprotQ8LC032e-76ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLM0ZJU91e-162M0ZJU9_SOLTU; Uncharacterized protein
STRINGSolyc01g010600.2.11e-177(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8482498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.12e-79HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]