PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g007270.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 159aa    MW: 18544.7 Da    PI: 4.1812
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g007270.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.24.5e-115643699
                      EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3 36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                      + le ++g+ Wev++  + ++g+++l+kGW++F+    + ++ +++F+++  s f  +v ++++
  Sopen01g007270.1  5 VFLEAPHGKAWEVEV--EMSQGQIWLAKGWNDFCAYYSISVRSILMFTYIPCSHF--HVAIYDQ 64
                      67999**********..*******************************9954666..9998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.674165IPR003340B3 DNA binding domain
PfamPF023625.5E-8564IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.2E-13573IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-13564IPR015300DNA-binding pseudobarrel domain
CDDcd100172.84E-10563No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MLNPVFLEAP HGKAWEVEVE MSQGQIWLAK GWNDFCAYYS ISVRSILMFT YIPCSHFHVA  60
IYDQSRSEIE YPIHQDIEAD EEEEVIPVLQ DNASVIEEDI PVYIQANANV IEQDYPVEIR  120
PKYRYNQHGE YEAGYEEGAE WRVDIGYNRS KVQKIPTPL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027767991.14e-80B3 domain-containing transcription factor VRN1-like
TrEMBLK4AUF53e-61K4AUF5_SOLLC; Uncharacterized protein
STRINGSolyc01g015210.1.14e-62(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7499524
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.11e-11B3 family protein