PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g007840.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 260aa    MW: 29709.6 Da    PI: 4.6909
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g007840.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP105.58.3e-3367166294
               TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg..... 88 
                       +g+kdrhsk++T++g++dRRvRls ++a++f+d+qd+LG+d++sk+i+WL+++ak+ai++l + +++ +s   ++++ + s ++++s+     
  Sopen01g007840.1  67 PGRKDRHSKVSTAKGPKDRRVRLSPNTAIQFYDVQDRLGYDRPSKAIDWLIKEAKAAIDALGEFPNNFHSTKlNPKKMQYSFDQEQSPefsqe 159
                       79***********************************************************99944444333455555555554444444333 PP

               TCP  89 .kaaksa 94 
                        +  +++
  Sopen01g007840.1 160 nRGVPNS 166
                       2333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.5E-3168162IPR005333Transcription factor, TCP
PROSITE profilePS5136930.01369127IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MNHQFQVSDE EDGSEEEEEE EEEVFQENDI GNLQSHYQNQ QMPQSLCKKP EKWANFIAME  60
AELFEPPGRK DRHSKVSTAK GPKDRRVRLS PNTAIQFYDV QDRLGYDRPS KAIDWLIKEA  120
KAAIDALGEF PNNFHSTKLN PKKMQYSFDQ EQSPEFSQEN RGVPNSECGV QDKQQEVNYD  180
IPNLFSSSDG LKIPFLSDLQ SYPHGHFLNF QSLQDDTILS SGNHHQGSFF TTTSVNHFPS  240
VLSQIRCFLT GNPFSPVSSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-2074127154Putative transcription factor PCF6
5zkt_B1e-2074127154Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015069120.11e-156transcription factor TCP10-like
TrEMBLG3BGU21e-151G3BGU2_SOLLC; TCP transcription factor 1
STRINGSolyc02g077250.2.11e-151(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41122145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.33e-31TCP family protein