PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g010070.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 242aa    MW: 26915 Da    PI: 6.0216
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g010070.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.70.0004859743954
                      TCHHHHHHHHHHHHHH CS
               HLH 39 sKaeiLekAveYIksL 54
                      +K++i+ekAv++I++L
  Sopen01g010070.1 59 DKSTIVEKAVNHIQKL 74
                      8*************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.108.1E-55788IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MNGGGENNHV FSWETNDGWP YQNLNDNQIG SGVTFEGDKL QDPNRFDTYQ PLTVVNEADK  60
STIVEKAVNH IQKLHNTFEK LEQEKLERLQ EHNVRCMSSQ NFTNAGNNWE KYLGDQGSTH  120
NSSSITSTTH GTNPLMVNNN IPTGFVTWSS PNVILNVCGE NAHISVCCPK KSGLFTFICY  180
VLGKHKIEIV PAQVSSDQFR SMFMIQAHAK GGTGIAQVSE ASRVEEMYKQ VAIEIMSFAA  240
PN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019067637.11e-159transcription factor bHLH95-like
TrEMBLK4AUD01e-163K4AUD0_SOLLC; Uncharacterized protein
STRINGSolyc01g014960.1.11e-164(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13242369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.13e-15bHLH family protein