PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g011160.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 163aa    MW: 18610.2 Da    PI: 9.5745
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g011160.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.48.7e-14952144
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                      k+ie+ + r+  +s+R+  i KK +EL v C+++va+++fs+ g
  Sopen01g011160.1  9 KKIEDPTSRKLFYSNRKYSIVKKSNELAVVCGTDVALLMFSPAG 52
                      68****************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.0E-13162IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.217153IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-16153IPR002100Transcription factor, MADS-box
CDDcd001202.68E-16252No hitNo description
PRINTSPR004042.1E-9323IPR002100Transcription factor, MADS-box
PfamPF003191.9E-141052IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MGRNKIVMKK IEDPTSRKLF YSNRKYSIVK KSNELAVVCG TDVALLMFSP AGQDIIIEAM  60
NKSVNPRPIH NPNEQAHEKK LNEIKETLRE AQQKIRYYNP QVENISSVQE AEAYEQFLRS  120
NMEQIQQSKA KLLGVQGFVQ RNEYLVVSTE DTAAAGTSRG WTF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754402e-83HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027774508.18e-98agamous-like MADS-box protein AGL66
TrEMBLA0A3Q7HBW82e-93A0A3Q7HBW8_SOLLC; Uncharacterized protein
STRINGSolyc07g052700.2.12e-88(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52921836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.16e-14AGAMOUS-like 24