PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g011170.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 156aa    MW: 17532 Da    PI: 9.6285
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g011170.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.94.1e-16959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      k+ie+ + r+  +s+R+  i KK +EL v C+++va+++fs+ g++ +yss
  Sopen01g011170.1  9 KKIEDPTSRKQFYSNRKDRIVKKSNELAVVCGTDVALLMFSPAGQVTTYSS 59
                      689**********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006619.511161IPR002100Transcription factor, MADS-box
SMARTSM004325.0E-16160IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-10323IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.76E-19478IPR002100Transcription factor, MADS-box
PfamPF003191.0E-161057IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MGLNKIVMKK IEDPTSRKQF YSNRKDRIVK KSNELAVVCG TDVALLMFSP AGQVTTYSSK  60
ESVEDIMIEA MNKSVNPRPI PNPNEQAHEK KLNELKETLR VAQQKIRSNM EQIQQSTAKL  120
LGVQVLVQRN EYPAVSTEDT TAAGNGSSYL NAYWNQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754402e-98HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027774508.11e-82agamous-like MADS-box protein AGL66
TrEMBLA0A3Q7HBW81e-79A0A3Q7HBW8_SOLLC; Uncharacterized protein
STRINGSolyc07g052700.2.15e-76(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52921836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.11e-16AGAMOUS-like 66