PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g021420.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 127aa    MW: 14165 Da    PI: 8.9588
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g021420.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.84.8e-17655255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                      +y+G+r +k +g+Wv+eIr+p   g +  r +lg++ ++e Aa a++ a  +l+ 
  Sopen01g021420.1  6 KYRGIRKRK-WGKWVSEIRVP---G-SsERLWLGTYTSPEAAAIAHDIAYYCLRP 55
                      8*****999.**********8...4.34************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.74E-24567No hitNo description
SMARTSM003803.6E-23673IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-24667IPR001471AP2/ERF domain
PfamPF008471.8E-8653IPR001471AP2/ERF domain
PROSITE profilePS5103220.626667IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-16667IPR016177DNA-binding domain
PRINTSPR003676.8E-9718IPR001471AP2/ERF domain
PRINTSPR003676.8E-92945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MSFGAKYRGI RKRKWGKWVS EIRVPGSSER LWLGTYTSPE AAAIAHDIAY YCLRPESSSS  60
LHKLNFPSML PPNVQPGMSP TSVQKVASDA AMAIDAQFLT TPTPAQKHVD NYGQNQDLNI  120
SVEDYQY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015088883.13e-92ethylene-responsive transcription factor ERF020-like
SwissprotQ9C9I83e-39ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLM1AGV81e-81M1AGV8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000225282e-82(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA94942028
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.11e-41ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]