PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g021880.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family CAMTA
Protein Properties Length: 945aa    MW: 106507 Da    PI: 9.0827
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g021880.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1153.54.8e-48221392118
              CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 
                       lke ++rwl ++e+++iL n++++ lt++l+ +p+ gs++Ly+rk + +f kDG++w+k kdg+t++E+hek K g+v+vl+cyY+h+e n++
  Sopen01g021880.1  22 LKElHHRWLLPHEVCQILRNHQSFCLTQQLQLKPPAGSIFLYDRKLLPNFCKDGHHWRKNKDGQTIKEAHEKFKAGSVDVLHCYYVHGEGNKN 114
                       56669**************************************************************************************** PP

              CG-1  94 fqrrcywlLeeelekivlvhylevk 118
                       fqrr+yw+Lee+le+ivlvhy++vk
  Sopen01g021880.1 115 FQRRSYWMLEEQLEHIVLVHYRDVK 139
                       **********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143767.36618144IPR005559CG-1 DNA-binding domain
SMARTSM010761.5E-6121139IPR005559CG-1 DNA-binding domain
PfamPF038593.2E-4525138IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.102.1E-7388476IPR013783Immunoglobulin-like fold
SuperFamilySSF812963.32E-14390475IPR014756Immunoglobulin E-set
PfamPF018331.8E-4392474IPR002909IPT domain
SuperFamilySSF484036.06E-16576683IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.4E-15579684IPR020683Ankyrin repeat-containing domain
CDDcd002044.91E-13582680No hitNo description
PROSITE profilePS5029715.618588682IPR020683Ankyrin repeat-containing domain
PfamPF127969.4E-7605683IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0029621653IPR002110Ankyrin repeat
PROSITE profilePS5008810.526621653IPR002110Ankyrin repeat
SMARTSM002481500660690IPR002110Ankyrin repeat
SMARTSM00015110741763IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525409.29E-5770848IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM0001555795817IPR000048IQ motif, EF-hand binding site
PfamPF006120.12797816IPR000048IQ motif, EF-hand binding site
SMARTSM000150.11818840IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.231820847IPR000048IQ motif, EF-hand binding site
PfamPF006120.13823840IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 945 aa     Download sequence    Send to blast
MKGFQIFMYL LMESKVDLEQ ILKELHHRWL LPHEVCQILR NHQSFCLTQQ LQLKPPAGSI  60
FLYDRKLLPN FCKDGHHWRK NKDGQTIKEA HEKFKAGSVD VLHCYYVHGE GNKNFQRRSY  120
WMLEEQLEHI VLVHYRDVKE GYRLGASRLQ PVHPGLLLEN PDSSSRPCFV FGPAFQKSHT  180
SSPSLVDLKE QALSSELHSG DSKGLMAFSR SKERFQLNPQ VRAFMSSGFR RFERNLNVML  240
QRKFYSGHFN LADLRSSKLT YAKLYAGKAV ANNRSRLAIT SGKVFEVNIH VAPPQIQNIS  300
SSQTVVTPDA AVKTSSLDGG LNSDEVGSRK WMDREFAGGN KSLMSSDSGN YWNTLDTDNG  360
DKEVSTLSRH LLLEANSVGT SPSQKQLFRI FDFSPQWAFS GVETKVLIVG TFLVHRKYLT  420
CHKWSCMFGE VEVSAEVQTQ SIRCQVPFHA PGHVPFYVTC GNRLACSEVR EFEYREKSSE  480
LALALRPSDE VHLQVQLVKL LYSGLNKKFL DCSSRECEKC KLKTQLCSLK CLTGNATERL  540
EDLLAVIECD HINFKDVQIQ NFMKDKLYEW LVSRAHEEDK GPNILNDQGK GVIHLVAALG  600
YEWGLLPLIA AGISPNFRDA CGRTALHWAA HYGREDMVIA LIKLGVAAGA VDDPTTASPG  660
GRTAADLASS RGYKGIAGYL AESDLTSHHQ LLATSKNALD TIGAGLEAEK VYESAVQEIV  720
PLNGTIDDDV SLKASLASLR KSAHAAALIQ AAFRARSFRQ RQLTESRNDV SEASLDLVAL  780
GSLNKVQKVN CFEDYLHSAA INIQQKYCGW KGRREFLKVH NQIVKMQALV RGHEVRKQYK  840
KFVWAVSILE KGILRWRRKK TGLRGFWPEK TSETGTVERE KEEEYDYLSI GLKQKCAGVE  900
KALGRVESMV RHPEARDQYM RMVAKFKSCK LDDGGREVNR SSPPV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN5660500.0JN566050.1 Solanum lycopersicum calmodulin-binding transcription factor SR4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015068250.10.0calmodulin-binding transcription activator 2-like isoform X1
TrEMBLH8ZRY50.0H8ZRY5_SOLLC; Calmodulin-binding transcription factor SR4
STRINGSolyc01g057270.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137161011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.11e-167ethylene induced calmodulin binding protein