PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g024030.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 114aa    MW: 13172.2 Da    PI: 9.5113
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g024030.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF21.33.6e-071659245
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                       ie ++ r ++fs+R+n++l  Ae L    + ev v++fs+ gk
  Sopen01g024030.1 16 LIEFERARAISFSQRKNTLLQDAEKLAKQSGYEVGVMLFSPGGK 59
                      5788899*********************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.068767IPR002100Transcription factor, MADS-box
SMARTSM004322.4E-9766IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-16895IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-6929IPR002100Transcription factor, MADS-box
PfamPF003192.1E-101762IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-62944IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-64465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MENEIKKGKE KIELKLIEFE RARAISFSQR KNTLLQDAEK LAKQSGYEVG VMLFSPGGKP  60
FSCASTSIED IIGKFLKGKL EDHQRYHVEV KSIGFEELED LRKDLQTLNK KERR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015079024.12e-77agamous-like MADS-box protein AGL29
TrEMBLA0A3Q7I4P37e-40A0A3Q7I4P3_SOLLC; Uncharacterized protein
STRINGSolyc03g119680.1.17e-43(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17801260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.19e-11AGAMOUS-like 20