PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g025960.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 442aa    MW: 49319.1 Da    PI: 5.678
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g025960.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.34.2e-131050242
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                      +ien + r v++ kR++g l KA EL +LCd+e a ++ ss
  Sopen01g025960.1 10 FIENRTERRVSYRKRQKGFLTKARELKTLCDVELATLVNSS 50
                      8**********************************999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.044150IPR002100Transcription factor, MADS-box
SMARTSM004325.7E-13160IPR002100Transcription factor, MADS-box
CDDcd002662.24E-15383No hitNo description
PRINTSPR004041.5E-8323IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.32E-16394IPR002100Transcription factor, MADS-box
PfamPF003198.5E-131050IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MVRKNVKLNF IENRTERRVS YRKRQKGFLT KARELKTLCD VELATLVNSS YHDEPEVFPN  60
HEAAINLFTK FIVLPEEKRS KNMKTHEMII EKRIEKIEKE LEKQTTHEEG STSNAPQPID  120
APMDSGGTSF DMQWAPLLVP IDAPVLSEIP LLVSSTIPTG TNFERPRAPL NISPPSIIPL  180
TASLMIHSNA PSQMPQFMFP FRNPPQMVPH VDLPQIPSLL SSQRLREDLN DLCYVINKNL  240
KLINDGIKSN APQPIDASID SGGTIFNIQW APLLVPVDAP VLFEIPLLVS STISNGTNFE  300
RSRFPLNLSP PLMIPLTTSL MIPSNAPSQM PQFMFPLRNP PQMVPHVDLS QVPSLLPSQM  360
YLEMTYPILK TTITYPTPSP TITPAMSNLM FTPTSPQIDP LMNISPVSAS TPIGNNVDGS  420
LGIPWSPYFS NLLSLNDDEI MV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010319833.11e-105agamous-like MADS-box protein AGL65
RefseqXP_015169316.11e-106PREDICTED: agamous-like MADS-box protein AGL65
TrEMBLM1C7X31e-110M1C7X3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000617241e-111(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13291040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31630.12e-12AGAMOUS-like 86