PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g025980.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 269aa    MW: 30422.8 Da    PI: 6.6943
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g025980.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.53.4e-131051243
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                      + en + r+v++ kR++g l KA EL +LCd+e a ++ s +
  Sopen01g025980.1 10 FMENRTERKVSYRKRLKGFLTKARELNTLCDVELATLVNSDN 51
                      689********************************9998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.862151IPR002100Transcription factor, MADS-box
SMARTSM004323.1E-14160IPR002100Transcription factor, MADS-box
CDDcd001201.94E-14359No hitNo description
PRINTSPR004048.6E-9323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-17394IPR002100Transcription factor, MADS-box
PfamPF003191.3E-121151IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MVRKKVKLAF MENRTERKVS YRKRLKGFLT KARELNTLCD VELATLVNSD NHDEPEVFPN  60
HEVATSLFTK FIDLPEEKRS KNMKTHEMII EKRIEKIEKE LEKVRKENKK MEYTNQMYGL  120
LNGEEMPNNR LPEDLNDLSY VINKHLKLIN DGIKSKTNKE GSTSNAPLPI DVPIDSGGTS  180
FDMQWDPLLA PIDAPVLSEI PLLVSSTISS GTNFDGPRDP LNLSPPSMIP SNAPSQMLQF  240
HVPFEQSSSN GSTSGSFTGF FFVIFTKVS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225RKKVKLAFMENRTERKVSYRKRLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010319833.11e-153agamous-like MADS-box protein AGL65
TrEMBLA0A3Q7EFA81e-152A0A3Q7EFA8_SOLLC; Uncharacterized protein
STRINGPGSC0003DMT4000617241e-136(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13291040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26630.17e-19M-type_MADS family protein