PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g026510.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 207aa    MW: 23743.1 Da    PI: 7.4394
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g026510.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF702.2e-221461249
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                      r +n++ rq tfskRr g++KKA+ELS+LC+a++a++++ +++kly +
  Sopen01g026510.1 14 RMQNQISRQATFSKRRFGLFKKASELSTLCGADIAIVVYCPSNKLYSF 61
                      789*******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.254565IPR002100Transcription factor, MADS-box
SMARTSM004329.2E-30564IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-25677IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-19727IPR002100Transcription factor, MADS-box
PfamPF003192.3E-231461IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-192742IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-194263IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MRRPNHRRRI QIARMQNQIS RQATFSKRRF GLFKKASELS TLCGADIAIV VYCPSNKLYS  60
FWHPFVESIV ERFLEEDLTP GTNDPNPIII AQQNANVDEI NRKLNTLEKE FAKEKRRGQT  120
LQALRTEPSH EKLIFSGLKS LCEALEAADE EVYRVVSKLL EADEIFLYQT IGSVFAPLIV  180
RESTLFDSDE GSSQSSEYIL LALFKVQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A3e-15790385MEF2 CHIMERA
6bz1_B3e-15790385MEF2 CHIMERA
6bz1_C3e-15790385MEF2 CHIMERA
6bz1_D3e-15790385MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015080026.11e-152agamous-like MADS-box protein AGL62
TrEMBLA0A3Q7EI391e-109A0A3Q7EI39_SOLLC; Uncharacterized protein
STRINGPGSC0003DMT4000971354e-98(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-27AGAMOUS-like 62