PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g026520.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 197aa    MW: 21636.6 Da    PI: 8.3258
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g026520.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.24.4e-231459247
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                      +i+n++n qvtfskRr+g++KKA+ELS+LC+++va++ fs++ k+y
  Sopen01g026520.1 14 KIQNQTNLQVTFSKRRAGLFKKASELSTLCGVNVAIVAFSPSKKVY 59
                      79*****************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.717565IPR002100Transcription factor, MADS-box
SMARTSM004324.4E-30564IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-26680IPR002100Transcription factor, MADS-box
CDDcd002657.18E-31673No hitNo description
PRINTSPR004041.7E-18727IPR002100Transcription factor, MADS-box
PfamPF003193.9E-241459IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-182742IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-184263IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MRKPNGRKKI EIAKIQNQTN LQVTFSKRRA GLFKKASELS TLCGVNVAIV AFSPSKKVYA  60
CGHPSVESIV DKFVGENPPP ETDDPNPIIV AHQNANIDEI NKKLNKLERS LERERKHGQA  120
LQALRTEPSN EKLSFFDLKI LCESLEATDK EVEKLASQLM ECGIEFPYQT IGSALAPLRA  180
RDSTLSVSGE GSSGSGE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-176106294MEF2C
5f28_B7e-176106294MEF2C
5f28_C7e-176106294MEF2C
5f28_D7e-176106294MEF2C
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015080039.11e-143agamous-like MADS-box protein AGL62
TrEMBLA0A3Q7EEM11e-132A0A3Q7EEM1_SOLLC; Uncharacterized protein
STRINGPGSC0003DMT4000160921e-115(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-32AGAMOUS-like 62