PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g028210.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 309aa    MW: 34572.5 Da    PI: 4.573
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g028210.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF551e-171660448
                      -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
            SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                       ++s r+vtfskRr+g++KKAeEL +  +a++a++++s+ g+ly+
  Sopen01g028210.1 16 ASNSSRKVTFSKRRTGLFKKAEELATKSGARIALLVLSPAGRLYT 60
                      57889***************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.843565IPR002100Transcription factor, MADS-box
SMARTSM004327.2E-21564IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-17664IPR002100Transcription factor, MADS-box
CDDcd001201.48E-21662No hitNo description
PRINTSPR004045.9E-13727IPR002100Transcription factor, MADS-box
PfamPF003192.4E-181760IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-132742IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-134263IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MTKGTGKKKI DIKKLASNSS RKVTFSKRRT GLFKKAEELA TKSGARIALL VLSPAGRLYT  60
SGDVSLFENN GFSSKPQLST EIASNSHVKP NTLRLKNLNV EGCSEIFLPD GVLYSASEIP  120
IVEDNLQNNG FSSNSDLSTD FSSNFYEDWS TLWLKNFKGN SEIFSPPGGF YNSGEFPIVV  180
DELKNNEFPS NSDLSIEISS NSYAKPSTLH LKNFNVEGCS EIFSTDGRFY SSNEFSIVND  240
TLKNNWFSSN SDPSTDLGSN LYEYWSMENF NVEECSSIEE LMLLKEKLEE KRDEIILKME  300
AEFIDSLLV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015080537.10.0myocyte-specific enhancer factor 2A-like
TrEMBLA0A3Q7EFB10.0A0A3Q7EFB1_SOLLC; Uncharacterized protein
STRINGSolyc01g066500.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1716844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.12e-11M-type_MADS family protein