PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g028340.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 300aa    MW: 33224.6 Da    PI: 5.1951
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g028340.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.21e-131158148
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                      k+i  +s r+v fskRr+g++KKA  L   ++a+va+++fss+gk y+
  Sopen01g028340.1 11 KKITKESARKVAFSKRRKGLFKKAVQLESKTGAKVAILVFSSSGKPYT 58
                      678999**************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006619.413363IPR002100Transcription factor, MADS-box
SMARTSM004326.2E-17362IPR002100Transcription factor, MADS-box
CDDcd001201.03E-20458No hitNo description
SuperFamilySSF554554.06E-18473IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-11525IPR002100Transcription factor, MADS-box
PfamPF003196.9E-181258IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-112540IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-114061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MGKGKQKIEI KKITKESARK VAFSKRRKGL FKKAVQLESK TGAKVAILVF SSSGKPYTCG  60
DVEKLYGISD SFNLQTHSES NSIWDSFNLQ THSESNGIWD SFNLERPCES NGMWDSFNII  120
EGPCSSSGQN GMWDSFNLET HCSSSGQSGM WDSFNLKRPC ESNGMRDSFN IIEGPCSSSG  180
QNGMWDSFNL ERPCSSSGQN GMCDSYNLER HCSSSGIPSG SNDIWDSFNV ETHCSSSEST  240
GMSDSFNVET HCSSSGQSVM WDSFNVEACH NVNELLLLKA HLESTREKLL ESQFLDSLWS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015060723.10.0transcription factor mef2A-like
TrEMBLA0A3Q7EFH40.0A0A3Q7EFH4_SOLLC; Uncharacterized protein
STRINGSolyc01g066730.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1846544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17310.15e-10M-type_MADS family protein