PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g028840.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NF-YB
Protein Properties Length: 138aa    MW: 15030.6 Da    PI: 5.9617
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g028840.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB168.39.5e-5322117297
             NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                       reqdr+lPianv+rimk++lP nakisk+aket+qecvsefi+fvt+easdkc++e+rkt+ngdd++wal+tlGf+dy  +lk yl++yre e
  Sopen01g028840.1  22 REQDRLLPIANVGRIMKNILPPNAKISKEAKETMQECVSEFIGFVTGEASDKCRKERRKTVNGDDICWALGTLGFDDYSGALKRYLHRYRESE 114
                       89******************************************************************************************* PP

             NF-YB  95 gek 97 
                       gek
  Sopen01g028840.1 115 GEK 117
                       997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.6E-4918122IPR009072Histone-fold
SuperFamilySSF471131.34E-3724121IPR009072Histone-fold
PfamPF008081.4E-262791IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.4E-155573No hitNo description
PRINTSPR006151.4E-157492No hitNo description
PRINTSPR006151.4E-1593111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MSQQNIGGAS SSNDEGAAGS SREQDRLLPI ANVGRIMKNI LPPNAKISKE AKETMQECVS  60
EFIGFVTGEA SDKCRKERRK TVNGDDICWA LGTLGFDDYS GALKRYLHRY RESEGEKVNQ  120
EQAGGGGSGS NQPRNFLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-4322112292Transcription factor HapC (Eurofung)
4g92_B2e-4322112292Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015087634.15e-99nuclear transcription factor Y subunit B-5-like
SwissprotO822483e-60NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A3Q7EG933e-96A0A3Q7EG93_SOLLC; Uncharacterized protein
STRINGSolyc01g067130.2.15e-97(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.11e-62nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]