PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g029220.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 216aa    MW: 24649.6 Da    PI: 9.3311
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g029220.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.61.1e-0868113855
                       HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        Er+RR ++ + ++ L++llP+ +   +  K +   i+ + ++YIk L+
  Sopen01g029220.1  68 KERNRRGKMAELYSLLQSLLPTiS---HIHKATREKIVVESIDYIKRLE 113
                       6*********************99...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.4160112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-1066135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-566118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.38E-767116No hitNo description
PfamPF000106.3E-668113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.7E-969122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MWQEMMMKEE AEEEEIERLF MGVMGGYKDA FMPPLTDFST INEMGSSSSY GNKRHKKEAP  60
LADDNMHKER NRRGKMAELY SLLQSLLPTI SHIHKATREK IVVESIDYIK RLEEEVLRLK  120
NLKKSVVVYK PALSQWRNRV SSVNATVSKG LAFFGIQFQL TQGLMTNIFS VLDKHQAEVL  180
AANISTLFCL HVSFFIVPGF AAEVSRKSET VSLPTR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-158HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015088497.21e-136uncharacterized protein LOC107031584, partial
TrEMBLA0A3Q7EFT01e-118A0A3Q7EFT0_SOLLC; CASP-like protein
STRINGSolyc01g067340.1.11e-134(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA132481415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.19e-08bHLH family protein