PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen01g030700.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

M-type_MADS

Protein Properties

Length: 197aa MW: 21685.6 Da PI: 6.5211

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen01g030700.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	74	1.2e-23	15	61	3	49
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +n++n qvtfskRr+g++KKA+ELS+LC+a+va++ fs+++k+y + Sopen01g030700.1 15 MQNQTNLQVTFSKRRAGLFKKASELSTLCGANVAIVAFSPSNKVYAF 61 68*******************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.3E-32	5	64	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	25.259	5	65	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.35E-27	6	78	IPR002100	Transcription factor, MADS-box
CDD	cd00265	3.95E-34	6	78	No hit	No description
PRINTS	PR00404	3.7E-20	7	27	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.1E-24	15	61	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.7E-20	27	42	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.7E-20	42	63	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MRKPNGRKKI EIAKMQNQTN LQVTFSKRRA GLFKKASELS TLCGANVAIV AFSPSNKVYA 60 FGHPSVESIV DKFVGDNHPP DTDDPNPIIV AHQNANIDEI NEKLNRLEIS LKRERKHGQA 120 LQALRIEPPN EKLSFFDLMI LCESLEAADK NVEKLAIQLV ECGIEFPYQT IGSALAPLRD 180 RESTPSDSGE GSSGSGE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3kov_A	1e-17	6	91	1	86	Myocyte-specific enhancer factor 2A
3kov_B	1e-17	6	91	1	86	Myocyte-specific enhancer factor 2A
3kov_I	1e-17	6	91	1	86	Myocyte-specific enhancer factor 2A
3kov_J	1e-17	6	91	1	86	Myocyte-specific enhancer factor 2A
3p57_A	1e-17	6	91	1	86	Myocyte-specific enhancer factor 2A
3p57_B	1e-17	6	91	1	86	Myocyte-specific enhancer factor 2A
3p57_C	1e-17	6	91	1	86	Myocyte-specific enhancer factor 2A
3p57_D	1e-17	6	91	1	86	Myocyte-specific enhancer factor 2A
3p57_I	1e-17	6	91	1	86	Myocyte-specific enhancer factor 2A
3p57_J	1e-17	6	91	1	86	Myocyte-specific enhancer factor 2A
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Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	0.0	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015081063.1	1e-144	agamous-like MADS-box protein AGL62
TrEMBL	A0A3Q7EEM1	1e-121	A0A3Q7EEM1_SOLLC; Uncharacterized protein
STRING	PGSC0003DMT400016092	1e-108	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA204	24	223

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	2e-33	AGAMOUS-like 62