PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen01g030710.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

M-type_MADS

Protein Properties

Length: 197aa MW: 22248.8 Da PI: 6.561

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen01g030710.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	73.2	2.1e-23	14	61	2	49
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ri+n++ rq tfskRr g++KKA+ELS+LC+a+v ++++s+++k+y + Sopen01g030710.1 14 RIQNQTSRQATFSKRRFGLFKKASELSTLCGADVGIVVYSPSNKVYSF 61 89********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	25.105	5	65	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.0E-31	5	64	IPR002100	Transcription factor, MADS-box
CDD	cd00265	3.99E-34	7	74	No hit	No description
PROSITE pattern	PS00350	0	7	61	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-20	7	27	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.7E-27	7	78	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.1E-26	14	61	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-20	27	42	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-20	42	63	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MRRPNNRRRI QIVRIQNQTS RQATFSKRRF GLFKKASELS TLCGADVGIV VYSPSNKVYS 60 FGHPSVESIV ERFLGEDPTA STNDRNPMII AQQNANEDEI NRKLNTLERE LEKEKKRGQT 120 LQALRTEPSH EKRSFSGLKS LFEALEAADE EVERVVSQLL EADEVFPYQT IGSALDPLIV 180 RENTSSNFGE GSSQSSE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3kov_A	3e-16	7	73	2	68	Myocyte-specific enhancer factor 2A
3kov_B	3e-16	7	73	2	68	Myocyte-specific enhancer factor 2A
3kov_I	3e-16	7	73	2	68	Myocyte-specific enhancer factor 2A
3kov_J	3e-16	7	73	2	68	Myocyte-specific enhancer factor 2A
3p57_A	3e-16	7	73	2	68	Myocyte-specific enhancer factor 2A
3p57_B	3e-16	7	73	2	68	Myocyte-specific enhancer factor 2A
3p57_C	3e-16	7	73	2	68	Myocyte-specific enhancer factor 2A
3p57_D	3e-16	7	73	2	68	Myocyte-specific enhancer factor 2A
3p57_I	3e-16	7	73	2	68	Myocyte-specific enhancer factor 2A
3p57_J	3e-16	7	73	2	68	Myocyte-specific enhancer factor 2A
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269\|PubMed:18599653, ECO:0000269\|PubMed:18713950}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	0.0	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015081073.1	1e-142	agamous-like MADS-box protein AGL61
Swissprot	Q4PSU4	1e-32	AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBL	A0A3Q7EI39	1e-131	A0A3Q7EI39_SOLLC; Uncharacterized protein
STRING	PGSC0003DMT400097135	1e-101	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA204	24	223

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	2e-24	AGAMOUS-like 61

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]