PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen01g030990.2

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB_related

Protein Properties

Length: 449aa MW: 50098.8 Da PI: 9.8684

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen01g030990.2	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26	2.2e-08	130	172	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eE ++l d++k++ + + Ia +++ +Rt +++k+r+++ Sopen01g030990.2 130 SWTKEETDQLFDLCKRFDLR-FVIIADRFPSNRTVEELKDRYYS 172 7*****************.*******************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF16282	2.7E-31	103	177	IPR032563	DAMP1, SANT/Myb-like domain
SuperFamily	SSF46689	4.08E-7	127	176	IPR009057	Homeodomain-like
SMART	SM00717	1.0E-9	127	176	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.8E-6	129	174	IPR009057	Homeodomain-like
CDD	cd11658	3.10E-19	131	173	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000812	Cellular Component	Swr1 complex
GO:0035267	Cellular Component	NuA4 histone acetyltransferase complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence Send to blast
MDAKDILGLP KNGPLMSQEK KSRPQKESQR KPDGISREVY ALTGGIAPLM PSIDINQLKR 60 RALSESEKIT WQWLPFTSSA RKDNLQLYHW VRVVNGVPPT GDYSFAKYNK SVDVIEYTDE 120 EYEKFLSNPS WTKEETDQLF DLCKRFDLRF VIIADRFPSN RTVEELKDRY YSVSRAITIA 180 RAPSPADVAG HPLVKEPYNA SQEVERKRAL SMVLSQTKHQ ERRDAEVLAA AKRISESRKA 240 AKAAEETELP DVSDAAPEGA EKAGIDVIST SPNAQLPSGI AAPPVSETAS TLASLRMLRV 300 YLRTYGLEQM VQAASSSAGL RTIKRVEQTL QDLGVNLKPK VPTKLVCAEH LELRKEILTL 360 LNLQKQVQYK EAEGSSYREG SYSETPGTPP KRAQRATDQD RTFIPDSTIF GGERAGKKDQ 420 KRKGPGRLSE VPSSPAQSKR PRKLKTSDG

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence Send to blast

MDAKDILGLP KNGPLMSQEK KSRPQKESQR KPDGISREVY ALTGGIAPLM PSIDINQLKR  60
RALSESEKIT WQWLPFTSSA RKDNLQLYHW VRVVNGVPPT GDYSFAKYNK SVDVIEYTDE  120
EYEKFLSNPS WTKEETDQLF DLCKRFDLRF VIIADRFPSN RTVEELKDRY YSVSRAITIA  180
RAPSPADVAG HPLVKEPYNA SQEVERKRAL SMVLSQTKHQ ERRDAEVLAA AKRISESRKA  240
AKAAEETELP DVSDAAPEGA EKAGIDVIST SPNAQLPSGI AAPPVSETAS TLASLRMLRV  300
YLRTYGLEQM VQAASSSAGL RTIKRVEQTL QDLGVNLKPK VPTKLVCAEH LELRKEILTL  360
LNLQKQVQYK EAEGSSYREG SYSETPGTPP KRAQRATDQD RTFIPDSTIF GGERAGKKDQ  420
KRKGPGRLSE VPSSPAQSKR PRKLKTSDG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3hm5_A	2e-21	102	187	4	93	DNA methyltransferase 1-associated protein 1
4iej_A	2e-21	102	187	4	93	DNA methyltransferase 1-associated protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305\|Ref.5}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT013562	0.0	BT013562.1 Lycopersicon esculentum clone 132299F, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015062299.1	0.0	SWR1-complex protein 4
Swissprot	Q8VZL6	0.0	SWC4_ARATH; SWR1-complex protein 4
TrEMBL	M1AI92	0.0	M1AI92_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400023383	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7626	15	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47210.1	0.0	MYB_related family protein

Publications ? help Back to Top
Gómez-Zambrano Á, et al. Arabidopsis SWC4 Binds DNA and Recruits the SWR1 Complex to Modulate Histone H2A.Z Deposition at Key Regulatory Genes. Mol Plant, 2018. 11(6): p. 815-832 [PMID:29604400]