PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g031140.3
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 209aa    MW: 23364.9 Da    PI: 4.3863
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g031140.3genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.34.3e-302583259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                      +D ++WrKYGqK++kgs++pr+YYrC+s+ gC++kk+ver+++d ++++itY+++Hnh+
  Sopen01g031140.3 25 SDCWSWRKYGQKPIKGSPYPRGYYRCSSSkGCSAKKQVERCSKDASLFIITYTSSHNHP 83
                      699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.3E-321685IPR003657WRKY domain
SuperFamilySSF1182906.67E-262185IPR003657WRKY domain
SMARTSM007741.0E-342484IPR003657WRKY domain
PROSITE profilePS5081130.4232585IPR003657WRKY domain
PfamPF031064.3E-252683IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MAQKVVMTVQ MEAKSLKQKN EGPPSDCWSW RKYGQKPIKG SPYPRGYYRC SSSKGCSAKK  60
QVERCSKDAS LFIITYTSSH NHPGPNLPKD SVKQEPIVDQ HVSLEDNNDE DDDDNDDTKS  120
CKTPLNSTTA STSIPQGILE ENLFTDNFLG TISYDDFLPL SYPQLMKFPK SELSEENDFY  180
DELGELELPP SSTSFAGIFE EAILVDPSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-2026861880Disease resistance protein RRS1
5w3x_D5e-2026861880Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015055738.11e-155probable WRKY transcription factor 65 isoform X1
TrEMBLM1AI261e-134M1AI26_SOLTU; Uncharacterized protein
STRINGSolyc01g079360.2.11e-137(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.17e-34WRKY DNA-binding protein 35