PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen01g032700.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bHLH

Protein Properties

Length: 1015aa MW: 115085 Da PI: 8.5397

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen01g032700.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.8	5.1e-10	196	241	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h + E++RR + ++f+ Lr+l+P++ K++ a+i A+ YI++L Sopen01g032700.1 196 KHHASEKQRRVHFSDKFQALRTLIPNP-----SKNDRATIIADAIGYINEL 241 7999********************9.....7*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.167	192	241	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.72E-13	195	262	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.47E-7	196	242	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.3E-13	196	263	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-7	196	241	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-6	198	247	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF52540	5.46E-21	645	705	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Gene3D	G3DSA:3.40.50.300	2.2E-27	646	833	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SuperFamily	SSF52540	5.46E-21	732	882	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Gene3D	G3DSA:1.10.8.60	1.4E-14	835	893	No hit	No description
SuperFamily	SSF48019	9.69E-8	895	958	IPR008921	DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal
Gene3D	G3DSA:1.20.272.10	4.4E-13	897	1003	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006260	Biological Process	DNA replication
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1015 aa Download sequence Send to blast
MYASQSLSFH PTSVQQDEKS FVQNHIAASG LVELQQQQQQ FHSSENNLNM QLEFGHDSNN 60 TRFHPNWEEI SFNPYNNQQL SYPISNPSLG LLGGFHQRTE LASTSTNLFY EPPQLNMPLN 120 LCTPQSSLFK ELFHLSPHGS SYGLGSSGTG SLFSHGHDQE EVTGNLYHDG SFHELTGDMM 180 INSAAIKKRE LGKDIKHHAS EKQRRVHFSD KFQALRTLIP NPSKNDRATI IADAIGYINE 240 LKMRVNELKV QVDIKKERIK RQRSIVEEYG AVIMEDNQDD QQVMMNKSTN WHHQIKSSKN 300 SNTEVDVRIM EDEVIVKFVQ HKQMLKGVNC LLVVSKALDE LQLDLQHVAG GLIGDHYSYL 360 LNSKICEGCT VISETQNVRS TNSDDSLKPS WHKKIDEERK RGSSSSKNSR SKNNLDEFNK 420 RNAIQEEKRY SARSPYYKGL TDSSKEINRQ KSLAGSTPGK DSSLSSSSTS NSSKSNLAIK 480 VQEWSASYFV RKGKEERASS SFLNVSSGNK NIRDPSSSET KVIRTTIGEE LGIHSKGVRR 540 RSKSRISQLD QGKPLRERAS EMQTNNIVLL PAAPAPAPPV TSPTKLSVPS PPPTPLILQT 600 SRDEEIESVQ LPLPGSPTQN VDDEKDTTNV KDTTVPEEQI DKRFTWADKY RPNALKHFLC 660 NRNIALELKA LAETDSSIRH FIFAGLPGVG KRTMIFALLR EIYGHDKLQA RDKCKVFHLK 720 GESVPSIKVN VKESNKHVEI NLSETKGYEK HVLVQLIKER KHKSSSRSAP SNPDHNCKAI 780 ILGEADKLST DALLYIKWMI ERYEGCYKVF FCCSDSTKLQ PIKSICKVFH LQKPSDDEIV 840 DVLKFIAQQE GIELPHQMAA RIASNSKSNL RQAIRSFEAT WHFNTSLTEN QEIKTGWEDD 900 IAEIAKNIIE EQSPKQLYDI RGKLQNLIEH NVSAEFIFNT VFEELKSNLD DQFHKEMDIL 960 KLKYNINSND VEQGKSDNDA VKKIVHKFMK IEEFTAKFMS WYKIFVLKKG NQNPI

Sequence ? help Back to Top

Protein Sequence Length: 1015 aa Download sequence Send to blast

MYASQSLSFH PTSVQQDEKS FVQNHIAASG LVELQQQQQQ FHSSENNLNM QLEFGHDSNN  60
TRFHPNWEEI SFNPYNNQQL SYPISNPSLG LLGGFHQRTE LASTSTNLFY EPPQLNMPLN  120
LCTPQSSLFK ELFHLSPHGS SYGLGSSGTG SLFSHGHDQE EVTGNLYHDG SFHELTGDMM  180
INSAAIKKRE LGKDIKHHAS EKQRRVHFSD KFQALRTLIP NPSKNDRATI IADAIGYINE  240
LKMRVNELKV QVDIKKERIK RQRSIVEEYG AVIMEDNQDD QQVMMNKSTN WHHQIKSSKN  300
SNTEVDVRIM EDEVIVKFVQ HKQMLKGVNC LLVVSKALDE LQLDLQHVAG GLIGDHYSYL  360
LNSKICEGCT VISETQNVRS TNSDDSLKPS WHKKIDEERK RGSSSSKNSR SKNNLDEFNK  420
RNAIQEEKRY SARSPYYKGL TDSSKEINRQ KSLAGSTPGK DSSLSSSSTS NSSKSNLAIK  480
VQEWSASYFV RKGKEERASS SFLNVSSGNK NIRDPSSSET KVIRTTIGEE LGIHSKGVRR  540
RSKSRISQLD QGKPLRERAS EMQTNNIVLL PAAPAPAPPV TSPTKLSVPS PPPTPLILQT  600
SRDEEIESVQ LPLPGSPTQN VDDEKDTTNV KDTTVPEEQI DKRFTWADKY RPNALKHFLC  660
NRNIALELKA LAETDSSIRH FIFAGLPGVG KRTMIFALLR EIYGHDKLQA RDKCKVFHLK  720
GESVPSIKVN VKESNKHVEI NLSETKGYEK HVLVQLIKER KHKSSSRSAP SNPDHNCKAI  780
ILGEADKLST DALLYIKWMI ERYEGCYKVF FCCSDSTKLQ PIKSICKVFH LQKPSDDEIV  840
DVLKFIAQQE GIELPHQMAA RIASNSKSNL RQAIRSFEAT WHFNTSLTEN QEIKTGWEDD  900
IAEIAKNIIE EQSPKQLYDI RGKLQNLIEH NVSAEFIFNT VFEELKSNLD DQFHKEMDIL  960
KLKYNINSND VEQGKSDNDA VKKIVHKFMK IEEFTAKFMS WYKIFVLKKG NQNPI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1sxj_E	1e-26	646	951	4	309	Activator 1 40 kDa subunit
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	0.0	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010323551.3	0.0	replication factor C subunit 3-like isoform X2
TrEMBL	A0A3Q7F1X5	0.0	A0A3Q7F1X5_SOLLC; Uncharacterized protein
STRING	Solyc01g081080.1.1	0.0	(Solanum lycopersicum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06170.2	4e-38	bHLH family protein