PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g033510.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 289aa    MW: 30554.5 Da    PI: 9.6453
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g033510.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.83e-06101122627
                       -SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                       C+ f     C++Gd+C+FaHg+
  Sopen01g033510.1 101 CSKFNTAEGCRFGDKCHFAHGE 122
                       888999899***********96 PP
2zf-CCCH314.3e-10257281227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       kt+ C +f++ G C +G++C+FaHgp
  Sopen01g033510.1 257 KTKMCANFSK-GLCTFGEKCHFAHGP 281
                       89********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.9623462IPR000571Zinc finger, CCCH-type
SMARTSM003561.93461IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.14E-53562IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-63659IPR000571Zinc finger, CCCH-type
PfamPF146080.894259No hitNo description
Gene3DG3DSA:4.10.1000.107.2E-1194124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-795124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.43695123IPR000571Zinc finger, CCCH-type
SMARTSM003560.08397122IPR000571Zinc finger, CCCH-type
PfamPF146080.018101121No hitNo description
SuperFamilySSF547911.02E-14160235IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.103.5E-15163233IPR004088K Homology domain, type 1
SMARTSM003221.1E-10163233IPR004087K Homology domain
PROSITE profilePS5008413.586164228IPR004088K Homology domain, type 1
PfamPF000131.3E-10166230IPR004088K Homology domain, type 1
CDDcd001051.86E-13166228No hitNo description
SMARTSM003565.4E-4255281IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.751255282IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-13256287IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-8256285IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-6257281IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MEFGRKRRGG GAFGSSGGMK KSRDESESFT TGVGSKSKPC MKFYSTSGCS FGAGCHFLHY  60
VPGYTAMSQL SNMGSNPAPP FGRNSASFSD GPGPAVKSKF CSKFNTAEGC RFGDKCHFAH  120
GEMDIGKQVR PAYDDFQAKG PPSGFSGYLE PSQPGLAATN FGASATTTIS VDASLAGNII  180
GKSGVNSKHI CRVTGVKLFI REHETDTNKR NVELQGTFDQ INQASAMVRE LISNISTPTG  240
GLKNAAPFSR GPPGPLKTKM CANFSKGLCT FGEKCHFAHG PSELQKPLT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015083884.10.0zinc finger CCCH domain-containing protein 31-like
SwissprotQ7F8R03e-91C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLM1A7930.0M1A793_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000161950.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.18e-62C3H family protein