PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g033650.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 362aa    MW: 40616.1 Da    PI: 5.1532
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g033650.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.32e-131051243
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                      +ien++ r+v++ kR +g l KA EL +LCd+e a ++ s+ 
  Sopen01g033650.1 10 FIENNTERKVSYRKRIKGFLTKARELNILCDVEMATLVNSPY 51
                      8**********************************9999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.1E-15160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.138149IPR002100Transcription factor, MADS-box
CDDcd002662.60E-16282No hitNo description
SuperFamilySSF554551.96E-18296IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-9323IPR002100Transcription factor, MADS-box
PfamPF003191.4E-121051IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MGRKKVKLAF IENNTERKVS YRKRIKGFLT KARELNILCD VEMATLVNSP YQNEPEIFPN  60
HEASTDLFTK FSNLPEEDKS KNMKTQENVI MKRIKKIEKE LEKVRQENKK MEYTNHMYGL  120
LNGEEMPNSK HPEYLNDLCY VINKNLKLID DSIEAKTHEE GSTSNAPQPF VGPMDSGGTN  180
FDISWAPLLA HVDDPVLSEI PLLVPSTVPG RTNFERPRAP LELVPDVTPT SMVPLTAPLM  240
GPSSASAQVP EFMFPLKTPS DLSLVSSSSS SQRYPEIAYT MAYPMSSPML VPPVSLQLDH  300
SMNILSMSAS GPVENNVNDS FVIPKSPSFS ELLSFTDDEI RTLIDDTSFN THVQDSNPHH  360
NN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015081309.10.0uncharacterized protein LOC107024890
TrEMBLM1C7X30.0M1C7X3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000617240.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13291040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26630.15e-27M-type_MADS family protein