PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g033890.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 400aa    MW: 43903.8 Da    PI: 5.8071
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g033890.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.2e-12328373655
                       HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +++Er RR ri +++ +L++l P+     +k  + a++L +Av+YIk+Lq
  Sopen01g033890.1 328 SIAERMRRTRISERMKKLQDLFPNM----DKQTNTADMLDLAVDYIKDLQ 373
                       689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.57322372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-16325389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.47E-12326377No hitNo description
Gene3DG3DSA:4.10.280.103.6E-15327393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-9328373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-13328378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MDKLSSFLFS GGGGGGGGSS SFKNGEGMEP EFFRSKEMMG SDFFQQQSQF QQSNSGGLTR  60
YRSAPSSFFA GILDGDGNNS GENFITGDGS SSSDSDSMFT ALLNNNDTNN NNGTRDLNDQ  120
NQKNQLQFGT SLKQEIGEEI EFGNENGVQN RYENGGVSYS VGVQMQTRAN LSNGNGDSDL  180
IRQSSSPAGF FNGFMREVGN FGASVGTNRE ASTSTNGFNN HISYSTNQSS TSNLMPSIAE  240
NESWNGASFN SLKRNRDDDL KMFSSNFNGM TNQNDESRNY TSSGLSHHLS LPKTSSEMAA  300
IEKYLQFQQD SVPCKIRAKR GCATHPRSIA ERMRRTRISE RMKKLQDLFP NMDKQTNTAD  360
MLDLAVDYIK DLQKQVQTLT DKKAKCSCTS KQLQYSNGTT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015069400.10.0transcription factor bHLH130-like
TrEMBLM1CDA40.0M1CDA4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000650290.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44352238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-66bHLH family protein