PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g034190.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 356aa    MW: 39678.1 Da    PI: 6.1816
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g034190.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.61.9e-152774148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g W++eEde+l  +  + G g+W+ Iar  g+ R++k+c++rw +yl
  Sopen01g034190.1 27 KGLWSPEEDEKLMSYMLRNGQGCWSDIARNAGLQRCGKSCRLRWINYL 74
                      678*******************************************97 PP
2Myb_DNA-binding49.97.3e-1680123146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg+++ +E+el+v+++  lG++ W+ Ia++++ gRt++++k++w++
  Sopen01g034190.1  80 RGAFSLQEEELIVHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNS 123
                       89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.5522274IPR017930Myb domain
SuperFamilySSF466895.08E-2825121IPR009057Homeodomain-like
SMARTSM007177.8E-112676IPR001005SANT/Myb domain
PfamPF002495.5E-142774IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-232881IPR009057Homeodomain-like
CDDcd001671.40E-93074No hitNo description
PROSITE profilePS5129424.53175129IPR017930Myb domain
SMARTSM007175.9E-1579127IPR001005SANT/Myb domain
PfamPF002494.7E-1480123IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2482130IPR009057Homeodomain-like
CDDcd001671.11E-1082122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MRKPEHNNTT MKEKEKEKVN KLGKLRKGLW SPEEDEKLMS YMLRNGQGCW SDIARNAGLQ  60
RCGKSCRLRW INYLRPDLKR GAFSLQEEEL IVHLHSILGN RWSQIAARLP GRTDNEIKNF  120
WNSTIKKRLK NNNNNNNNST PSPNTSDSSI GGIFPMQGHD VNNVMATLCM DNSSSTTSGS  180
SMQAMVPFNP FPQLDNTSYD ISGLVGPVNL GQFGCSGGDG GFLDYGVVET YSMMGLGSDE  240
FSIPSLEGVH NKSTTTTMGE SNNNSNVDFS SNNIVSGAND YDSMIEKKNN TNVNNNNQHL  300
MNMSGISDQS LKVEDYMVGF GNHHHWHGES LRIGEFDWEG LLANVSSLPY LDFQVE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27251295108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015072060.10.0transcription factor MYB46-like
TrEMBLM1A9C00.0M1A9C0_SOLTU; Uncharacterized protein
STRINGSolyc01g087130.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.12e-68myb domain protein 46