PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen01g034290.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NF-YA

Protein Properties

Length: 303aa MW: 33207.7 Da PI: 8.4425

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen01g034290.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	100.6	1.5e-31	145	201	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq Rak+e e+k +k+rkpylheSRh+hA+rR+Rg+gGrF Sopen01g034290.1 145 EEPVYVNAKQYHGILRRRQIRAKAELERKA-IKARKPYLHESRHQHAMRRARGTGGRF 201 69*************************9.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.4E-36	143	204	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	38.238	144	204	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	5.4E-27	146	201	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.0E-24	147	169	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	149	169	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	2.0E-24	178	201	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MPTIAKHDGR QLETGLRITS LSTTQMQPWW HGYGDNTMPL ASENAVAQEK SEGGNEDKET 60 KALAMDSGSD GNNEQYKQHL KHFAPTTAAI MAEQQKELTG HSAMLASYPY PDMQYGGMMT 120 YGAPVHPHLF EIHHARMPLP LDMEEEPVYV NAKQYHGILR RRQIRAKAEL ERKAIKARKP 180 YLHESRHQHA MRRARGTGGR FLNTKKLNDM DCTPDETKKY GATIPTHSGN SSGSGSSDQG 240 GKEGSTVQDM HKGHSQSFTT GNGHGSSVYF SASSGSEQGN GHYGHGSWSL LVNQASQGAA 300 SSN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	7e-20	145	205	2	62	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	0.0	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015063007.1	0.0	nuclear transcription factor Y subunit A-1-like isoform X1
Refseq	XP_015063008.1	0.0	nuclear transcription factor Y subunit A-1-like isoform X1
Swissprot	Q945M9	2e-37	NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBL	A0A3Q7EJE8	0.0	A0A3Q7EJE8_SOLLC; Uncharacterized protein
STRING	Solyc01g087240.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11232	20	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20910.1	6e-39	nuclear factor Y, subunit A9

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]