PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen01g036120.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

ERF

Protein Properties

Length: 222aa MW: 24831.8 Da PI: 6.0588

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen01g036120.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	46.1	1.2e-14	85	135	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr++ +g + AeIrdp + + +r +lg++ ++ +Aa a+++a+ k++g Sopen01g036120.1 85 RFIGVRRRQ-WGTFSAEIRDP---NrRGARLWLGTYESPRDAALAYDQAAYKIRG 135 578*887.******9...4334***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	21.364	85	143	IPR001471	AP2/ERF domain
CDD	cd00018	4.61E-25	85	145	No hit	No description
Pfam	PF00847	1.0E-9	85	135	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	9.4E-28	85	144	IPR001471	AP2/ERF domain
SMART	SM00380	7.8E-27	85	149	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.0E-10	86	97	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	9.15E-20	86	144	IPR016177	DNA-binding domain
PRINTS	PR00367	4.0E-10	125	145	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MNILIDDDEI FSLPSLDELE SITHLLYDDD SDFFETVSPM SLDVATLLPN IPTSNSIESP 60 VRPEPPEETK EPSVARENAP QDWRRFIGVR RRQWGTFSAE IRDPNRRGAR LWLGTYESPR 120 DAALAYDQAA YKIRGTKARL NFPDLIGSDV PMPPRVTARR RTRSRSRSPE PLTTSSSSSS 180 SSSSSSSSSS ENGTKKRKID LINSIAKSKL LCGVDLQMLI QM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	6e-22	84	148	4	68	ATERF1
3gcc_A	6e-22	84	148	4	68	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269\|PubMed:10652129, ECO:0000269\|PubMed:10792818, ECO:0000269\|PubMed:7756828, ECO:0000269\|Ref.2}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269\|PubMed:10652129, ECO:0000269\|PubMed:12090623, ECO:0000269\|PubMed:7756828, ECO:0000269\|Ref.2}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	0.0	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015063606.1	1e-159	ethylene-responsive transcription factor 1-like
Swissprot	Q40479	2e-33	ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBL	A0A0V0HG41	1e-123	A0A0V0HG41_SOLCH; Putative ethylene-responsive transcription factor 1-like
STRING	Solyc01g090340.2.1	1e-129	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA21	24	1165

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44840.1	1e-30	ethylene-responsive element binding factor 13

Publications ? help Back to Top
Nakano T,Nishiuchi T,Suzuki K,Fujimura T,Shinshi H Studies on transcriptional regulation of endogenous genes by ERF2 transcription factor in tobacco cells. Plant Cell Physiol., 2006. 47(4): p. 554-8 [PMID:16452120]